Matching a differential expression signature to perturbation references using perturbMatch2 months ago
Installation | Background | Overview | Reference signatures | How it works | Preparing input data | Load reference expression data | Choosing a full reference database | Map the query to the reference | Starting from a table or CSV file | Calculating regulator scores | Checking a known target | Using an explicit gene set | Visualise the results | Inspecting a single reference signature | Where the perturbed gene ranks: target_gene_percentile | Filtering on the target percentile | Functional enrichment of the regulator hits | Scoring methods available | Comparing scoring methods | Interpreting the score, zscore, and overlap columns | Tuning topN | Parallelisation | Verifying hits before interpretation | Saving results to a file | Related packages | Citation | Session information | Acknowledgements